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Pruning Indeterminate Tomatoes for Maximum Production in a Hoop House

April 12, 2023 5 min read 0 Comments

Tomato on a vine

Here we will walk you through how to prune and trellis to get the most from your plants. Each of the articles in this series has an accompanying video to let you see the process in action. With Nick from Bootstrap Farmer we start off this four part series by walking you through how to identify and prune the parts of indeterminate tomato plants. 

Before Nick came on at Bootstrap he had a successful business growing tomatoes year-round in a 30 by 36 heated greenhouse using a dutch bucket system. He also grew seasonal tomatoes in an unheated 30 by 96 foot hoop house, both bush varieties and indeterminate, as well as specialty tomatoes in outdoor raised beds.  In these articles we distill down his years of experience to help you increase your production and maximize your growing space. 

Why We Aggressively Prune Indeterminate Tomatoes?

Why does Nick cut off so much? To those not used to pruning, the amount of foliage that he removes may seem aggressive. Keep in mind that tomatoes are resilient plants. When you remove excess leaves, spent clusters and redundant suckers you are teaching the plant. Pruning tells the vine where you want the energy focused. The techniques we describe here can also be used on outdoor plants. Trellised plants in direct sun will want a little more foliage left on to help protect fruit from sun scald.   

Start by learning to identifying the parts of a tomato plant

Crown - The top section of the plant. This is the area where you will select one strong sucker to continue the vertical growth of the plant. Flowering will start in this section. 

Picture depicting crown of a tomatoe

Main Stem - This is the central stalk of the plant. Often referred to as the leader. A single leader plant is developed when the grower chooses one sucker to continue growing and removes all others.

stem of a tomato plant

Shoulder or Axil - Any junction of leaf and stem.

Sucker - An immature branch that grows out between the main stem and a shoulder.

Shoulder of tomato plant and sucker

Leaf - Tomatoes have compound leaves made up of leaflets which are distributed along the leaf rachis (central leaf stem).  

fruiting flower of a tomato plant

Flower Cluster - Also known as an inflorescence, these are composed of a central branch with multiple smaller branches terminating in individual flowers. The number and arrangement of flowers in a cluster is dependent on many factors including variety and growing conditions.

flower clusters of a tomato plant

Fruiting Cluster - A flower cluster that has been fertilized and is developing into ripe fruits. 

fruiting cluster of a flowering tomato plant

Identify the growing sections of a tomato plant

From top to bottom, each section of the trellised tomato plant has its job. Each of the four distinct zones will look dramatically different. This is because each section of the plant has a different job to do.


Parts of a tomato plant

Crowning and Flowering 

In the top section you will be teaching each of your plants to focus on a main stem and allow a single sucker to continue vertical growth. Below this crown point additional suckers will be removed to discourage branching

Fruit Set and Vegetative Growth 

Directly below the crown. This is where the majority of photosynthesis will take place. Additionally flower clusters will begin to set fruit and should be pruned to 4-7 fruits per cluster depending on the type. Cherry varieties can hold up to 7, larger fruits should be thinned to prevent too much weight on the fruiting branch.   

Fruit Harvest Zone

Harvesting happens below the vegetative section. In this area you will be removing most of the leaves to allow for better airflow and focus the nutrients on fruit ripening. This also helps streamline the harvesting process since you are not having to work around leaves to find fruit. 

Bare Stem Racetrack

This is where you have removed all the fruiting branches post harvest. This section will be lowered to run parallel with the floor and wrap around the base of the plants/pots. These vines can end up 50-70 feet long which is why we will go over lowering and leaning the vines in the next article. 

Tools you will need to begin trellising and pruning your tomato plants:

  • Support Structure
  • Hooks to hold the trellis line to the support structure
  • Trellis Line
  • Or a Complete Trellis System 
  • Stem Clips or Ties 
  • Clippers

How to Prune Your Indeterminate Tomato Plants

Keeping the bottoms of the plants free of foliage and old branches is vital for proper airflow. Higher on the plants you will leave fruiting branches and some foliage. At the crown of the plants leave more foliage to shade developing fruits. This also provides plenty of photosynthetic energy to keep the plant growing. On trellised plants it is ideal to prune a day or two after each harvest. Treat each section of the plant according to its particular job. Add clips as needed to support the vine. 

Bare Stem Racetrack

Remove all leaves and any branches left from harvested fruits. Here you are creating more bare stem to lower and lean in the next step. Bare the stem up to the next harvestable cluster. 

Fruit Harvest Zone

Remove all remaining leaf clusters except possibly those directly opposite a fruit cluster. This focuses the plant’s energy on ripening fruit. The increased airflow will also help mitigate pest pressure. If some clusters have fruit at dramatically different stages of ripening you can prune the smaller fruits off. 4-7 good fruit per branch depending on size. Remove any misshapen or damaged fruit. 

Fruit Set and Vegetative Growth 

Remove all suckers from the main vine stem including any emanating from a fruit cluster. Remove extra flowers from any cluster that has more than the desired 4-7 fruits setting. Remove any leaves with browning or pest damage. Remove any small branches that are forming from shoulder points off the main stem. 

Crowning and Flowering 

Carefully attach the crown of the vine to your trellis line with a clip placed just below the lead sucker. If you are rehabbing a vine you may leave an extra sucker to choose the best after another week of growth. Remove any suckers from leaf axils below this point. Keep all foliage in this section. 

What comes next for your tomatoes?

Now that you know how to identify the parts and prune an individual plant you can proceed to the next steps for trellising tomatoes. Once a plant is pruned you can move on to lowering and leaning. If you are getting ready to build a trellis and need help with supplies and design feel free to skip ahead to part 3 where we discuss trellising structures in the hoop house. Be sure and go back to lowering and leaning before your first prune so you have a plan in mind.

Already have your structures built but haven't pruned yet? Maybe the pruning got away from you for a few weeks? It happens on the farm, sometimes other tasks get in the way. Even if you feel overwhelmed by those wild plants, don't despair. In the 4th part of this series we will go in depth into the challenges and opportunities when pruning overgrown plants in a hoop house.


Watch the Tomato Pruning Video!

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