Managing Overgrown Tomatoes

September 03, 2021 10 min read 0 Comments

Overgrown tomatoes in a greenhouse

Nick recently had the opportunity to rehabilitate an overgrown hoop house. The vines were planted in March 2020 and not lowered until he pruned in August 2020. This gave us a unique opportunity to review most of the scenarios you will encounter over a season of growing, pruning, and trellising with the lower and lean method of pruning. 

Solving problems as you go through your hoop house and knowing how to spot various issues early will make you a more productive grower. For an introduction toPruning Indeterminate Tomatoes check out the first article in this series. We will review some of the basics here before we dive deep into the scenarios that Nick encountered as he pruned two 64’ rows of indeterminate tomatoes. 


Review of the parts of an indeterminate tomato plant 


Crown - The top section of the plant. This is the area where you will select one strong sucker to continue the vertical growth of the plant. 

Main Stem/Vine - This is the central stalk of the plant. Often referred to as the leader. A single leader plant is developed when the grower chooses one sucker to continue growing and removes all others.

Shoulder or Axil - Any junction of leaf and stem.

Sucker - An immature branch that grows out between the main stem and a shoulder.

Leaf - Tomatoes have compound leaves made up of leaflets which are distributed along the leaf rachis (central leaf stem).  

Flower Cluster - Also known as an inflorescence, these are composed of a central branch with multiple smaller branches terminating in individual flowers. The number and arrangement of flowers in a cluster is dependent on many factors including variety and growing conditions.

Fruiting Cluster - A flower cluster that has been fertilized and is developing into ripe fruits. 

parts of the tomato

Reviewing the growing sections of a trellised tomato

As we go through the different solutions to problems you will encounter when working with trellised tomatoes we will refer to four distinct sections of the plant. From top to bottom they each have a different job and distinct desired appearance. 


  1. The crown and flowering part of the vine where new growth is established. 
  2. The fruit set and vegetative zone where flowers become fruit clusters and a canopy of leaves helps the plant transpire while shading developing fruit below.
  3. The ripening and harvest zone is where the fruit can be easily inspected and harvested at a comfortable working height for the farmer. The ideal space for the harvest zone is between the knees to shoulder range of the person who will be doing the harvesting. 
  4. The heavy prune zone is a bare main stem cleaned of old clusters, suckers, and leaves. These pruned parts have served their purpose but are now taking nutrients and water away from the top part of the plant which is still growing and producing fruit. 


The basic rules of training and pruning a trellised tomato plant 

Keep in mind that tomato vines are resilient plants. They can handle pretty rough treatment when they are properly supported by being clipped to a trellis line. Aim to clip your vines every few feet of growth. It is ideal to clip within a few inches of every fruit cluster. If this puts your clips close together it is alright, more is better in this situation. 


As long as you keep your leader vine well supported and ensure the plant has enough leaves up top to provide canopy, your vines will continue to produce fruit. In fact, most F1 hybrid greenhouse tomato types will be more vigorous with some shaking around. The movement strengthens the vine and encourages self pollination. You will knock fruit off the vine. You will break the occasional branch.Give yourself permission to make mistakes as you go. 


Everyone has their own pruning style

Nick is a pretty aggressive pruner. Some people will choose to be a bit more gentle in their pruning. You will develop your own method as you gain experience. You may find that experimenting with pruning some plants more heavily than others helps you to find your ideal.Each plant will decide what it wants you to do and you will learn to listen. 

Throughout this series we have based our advice on single leader indeterminate tomatoes. Some growers elect to do a double leader system in their house, allowing each plant to develop two main stems. If you choose this style, lower and lean each plant's vines in the same direction. Instead of vines alternating individually towards the front or back of the house, you will have two traveling together around the racetrack.  

In the end it is up to you as the farmer to make choices. Each person will develop a slightly different style of vine maintenance. 

 

Solving problems in the hoop house

How to untangle vines

Especially if you have gotten behind on pruning there will be vines that tangle together or get hung up in the rafters and support structure of your hoop house. Start by pruning off everything below the next harvestable cluster. Do this for both vines if you have two tangled together before you try to lower them. 

Unhook the roller assembly so you can pull the first vine down and walk it along the row. Find the strongest sucker or branch at the crown of the plant. Squeeze your roller assembly to let down enough line to reach around two feet above the crown of the plant. Clip just below the leading sucker. Rehook the vine to the support wire far enough along the row that the next harvestable cluster is about level with your knees. 

Go back and clip along the vine for support and remove any leaves from what is now the fruit harvest section. If any branches have developed in this section remove them. The goal is to focus the plant's energy towards developing healthy clusters on the main vine. 

Damaged vine repair

When you come across a place where the vine has split in the center it is likely from a lack of support. Apply a tomato clip to attach the vine directly below the split section of the vine. If the split extends more than in an inch or two, place a clip at the top of the split as well.

If the vine has bent and fallen over at the top the main cell structure in the vine has been damaged. It is best to cut below the bend and treat this as you would a topped vine.

Saving a topped vine

There are few issues that can lead to a vine being topped. It may be a bent stem from an unsupported crown or a slip of the clippers. Sometimes in the process of untangling a vine you will bend or break the leader. 

Find the next strong sucker below the break. If the sucker is small you can leave two and come back to make a decision after a week more of growth. Mark the place that you need to come back to by putting two clips on the plant close together. This will remind you to come back to this spot the next time you are working the vine. 

If there are no viable suckers beneath the break, double clip below the strongest leaf cluster and come back to the vine next week. Chances are that the plant will send out a few suckers from the axils below this point. You can return and select the strongest. 

Repairing cut trellis line

Give yourself a little slack from the roller hook. Tie the cut ends together securely. Place tomato clips above and below the knot to reinforce your repair.  

Removing dead or severely damaged plants

Taking dead or clearly diseased plants out of the row will improve the overall health of your plants. The plant may have been stepped on or not receiving enough water. Cut the vine about an inch below the surface of the soil and remove it promptly from the house. Inspect the dead vine for signs of pest pressure as these vines can act as an early warning sign of developing problems.

Some people will want to replace these with a transplant. This is fine when the vines are quite small but once they are over a foot or two in height just leave the empty space. Having vines of dramatically different heights within a row is usually more trouble than it is worth. Particularly in a house that has become overgrown you will be able to use the hole made by removing the vine entirely as space to lean and lower a nearby healthy vine.

Making holes to work in

Aggressively pruning the first few vines that you work in the hoop house will help you to make a nicely sized hole to work with. This is an area of the support cable that is free of other hooks and vines. 

Once pruned, vines are at less risk of becoming tangled when you take the roller hook and move it further down the line. As you lower and lean vines you will need this space to move the vines into. You can also use any holes made by removing problem vines to get this process started. 

Remember that you are alternating directions as you move the vines. The first vine moves towards the back of the house and the second leapfrogs past it to travel towards the front. 

Roller hook operation

Using a roller hook to lower and lean may take a moment to get used to. The hook typically comes pre-rolled with a UVA resistant twine. The hook is bent significantly to hold it to the trellis cable. Some growers choose to bend this outward slightly to make them quicker to unhook and move. 

To let down the line you will squeeze the wire cage assembly and pull downward on the line.   

roller hook

How to work past the row to turn the vine along the race track pattern

When you reach the end of the row you will wrap the vine past and around existing stems to create the “racetrack” of stems that circles each row. This keeps the vines close to the root section of the plant and out of your paths. When you reach the end of a row extend the vine as far as you can out into your working room. This gives you the space and slack in the vine to turn around and continue back the other direction without bending the vine the next time you lean and lower. 

When to prune flower clusters

As you go along the vine from bottom to top take a look at each developing flower cluster. You may remember from the first part of this series that we recommend keeping between 4-7 fruits per cluster. When you come across a cluster with more than this, use your clippers to remove the smallest few from the end. 

You may also notice clusters that have both flowers and developing fruit. Use your best judgement to take that cluster down to an ideal number of fruit that will be ready around the same time. For example, if you have nine branching points on the cluster and six of them are already developing fruit you will remove the last three flowers from the tip. 

When to cut and when to keep leaves on the vine

Different varieties of tomatoes can have very different growth patterns. For those with a thicker top canopy you will remove nearly all the leaves in the fruit harvest zone. On plants with sparse leaf growth it can be beneficial to leave the leaf directly opposite a developing fruit cluster.

Improving airflow to prevent pest and fungal issues

Bare stems below the fruit harvest zone serve to keep air flowing at the base of the plants. Removing the majority of leaves in the fruit harvest zone allows that air to continue flowing up around developing fruits.All of this air flow helps prevent fungal issues from developing

Having harvested stems and low foliage near the ground can provide a ladder for pests to climb your vines and give them places to hide. When you remove these it is also far easier to spot developing problems early. It allows you to manage any issues in a targeted way saving on labor and treatment costs. 

When to stop pruning

The longer you stare at a particular vine the more you will find to cut. There comes a time when you need to say, “Good enough.” and move on. Allow yourself to get into a rhythm of pruning and learn how much time to spend in a particular place. You can always come back to that vine later. 

Working efficiencies to save labor hours and wear on your body

-Keep your equipment on you. If you drop a clip don’t bother to bend over every time. You can collect all these at the end as you go through and pull out all of the pruned material. 

-Aim to keep yourself and your fellow workers off of ladders whenever possible. It is hard on the body and the risks for injury are significantly higher. 

-Keeping up with pruning keeps the vines in a comfortable position for harvesting fruit and continuing the lower and lean process. 

-Invest in good quality equipment. Galvanized trellis wire at the proper diameter will last you for years and save you the heartache of coming in and finding that all of your vines are on the ground. 

-Clippers that fit your hand well are invaluable. (Nick and many of the others here at Bootstrap Farmer are devoted to their Felco Pruning Shears. While Emily is a fan of the Corona …)

Final thoughts on pruning tomatoes

Many of these scenarios seem the same but offer different options on what to do during the pruning process. Solutions repeat as many problems can have the same solution. Time and experience will teach you what the plant needs from you to produce the best tomatoes. 


You may choose to work your vines top to bottom or the other way around. You may have a different style of pruning from other people working on the farm. At the end of the day what matters is:

  • Good air flow at the bottom 
  • Consistent, easy to see fruit clusters in the harvest zone
  • A healthy canopy of leaves and flowers in the top crown section
  • Finding a happy medium between the needs of the vine and your optimal working conditions


Pruning tomatoes can be a meditative process. It’s honestly a great time while farming to catch up on podcasts or ebooks you’ve been meaning to listen to. Follow these guides and you will find your style and your rhythm as you grow. 

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