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August 27, 2025 11 min read 0 Comments
Mesh trays are a uniquely versatile garden supply. Invest in high-quality, heavy-duty mesh trays to speed up seed-starting and up-potting. You’ll save money and labor, and increase yields compared to other growing methods. Mesh trays allow easy bottom watering and help you grow microgreens like a pro. Their design allows you to use them with all your favorite seed-starting supplies. They come in various depths to align with what you’re growing and improve drainage.
The tiny holes in 1020 mesh trays provide proper drainage and airflow. The different tray depths also offer space for all your soil blocks. Read until the end, where we share other creative ways to use mesh trays you may not have thought of. Their countless uses on the homestead and farm make them worth every penny.
Look for these key characteristics in seed-starting and microgreen trays:
Durability
Food-grade, BPA-free materials
Compatibility with other trays needed for bottom watering
Pricing that fits your budget
Dimensions required for your project
Shallow and deep trays come in mesh or solid forms with or without drainage holes. Each has pros and cons.
Solid Trays with Holes |
Mesh Trays |
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Pros |
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Cons |
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Seed-starting methods include:
Soil blocking with mesh trays
Planting seeds in mesh trays
Growing in mesh trays without soil
Start seeds without cell trays or pots by soil blocking. This method provides extra airflow, enhancing the root system and reducing the risk of becoming rootbound. Plus, it cuts back on plastic use, making it eco-friendly. Snag a starter kit, which comes with everything you need. The mesh and solid-bottom trays make it nearly impossible to dump your soil blocks over accidentally.
A few of our favorite soil blockers are the micro, 2”, and Maxi 1.
Soil Block Size |
Blocks Made |
Benefits |
What It’s Best For |
¾” micro (Jessica from Sierra Flower Farm's most commonly used) |
20 |
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4 |
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1 four-inch block |
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Up-potting smaller blocks |
To soil block:
Pre-moisten your soil and mix it thoroughly with your hands. Remove any large chunks of debris.
Practice blocking to determine if the soil has enough moisture. If not, add more water.
Fill a mesh tray with blocks of the same size, or experiment with adding multiple sizes.
Use pins to create holes and sow seeds.
Put the mesh tray into a bottom tray of the same depth, with or without holes.
Not ready for the world of soil blocking? Air prune trays offer all the same benefits and come in bright colors or black.
Evenly distribute the seed-starting mix over your chosen tray by running it through your hands above the tray to break up any clumps. Loose soil:
Creates good seed-to-soil contact
Aerated for breathability
Increases germination rates and healthy roots.
Healthy roots travel through the soil to access the necessary water and nutrients.
You can sow seeds directly into mesh trays filled with soil. Select shallow or deep trays based on seed requirements. For instance, you may sprinkle 20-30 basil seeds in strips across a shallow mesh tray. They grow slowly and don’t have a strong root system in the early stages. But, fast-maturing nasturtiums form a long taproot quickly, so sow those a few inches apart in a deep mesh tray.
Thin and up-pot as needed. This article compares cell tray and pot sizes and recommends crops that perform well in each.
Do you have seeds with poor or questionable germination? Scatter them densely over a mesh tray to reduce soil waste and save space in the greenhouse.
Sow seeds two to three times as deep as their diameter and cover them with soil. If they need light to germinate, press them into the soil and do not cover. Lay long, flat seeds like squash and cucumbers horizontally or pointed (radicle) end down. If germination rates are low, sow more than one seed per cell. Avoid overcrowding by spacing them out as recommended on the seed packet or by crop type.
The fibrous material of our pre-cut hemp mat helps retain moisture, which may increase germination rates. It’s ideal for wheatgrass and microgreens. When you're done with it, toss it in your compost pile.
Add sterile coco coir to a mesh tray or mix it into your seed-starting mix for improved drainage.
To grow hydroponically, use Rockwool cubes inside mesh trays. Grab a mesh tray set that comes with the supplies you’ll need. Read more here.
Lightly mist trays before the seeds have germinated between waterings as needed. You may not need to mist if you use a humidity dome.
Once seeds germinate, bottom water by setting mesh trays inside a tray with no holes filled with a cup and a half of water. Set it gently to avoid splashing or drowning delicate baby greens or seedlings. Make sure the water touches the bottom of the mesh. If the soil is still dry, add more water. Add a cup at a time until the soil is evenly moist.
Keep conditions consistent until germination. After germination, remove humidity domes and the trays from heat, if recommended. Give the new sprouts light immediately and amend your watering schedule if needed. Note patchy germination or overcrowding, and change your seeding accordingly next time.
Avoid under- and overwatering and adjust watering if you notice these signs:
Dry soil, wilted leaves, and stunted growth indicate underwatering.
Overwatering will show up as damping off, mold, pest pressure, yellow leaves, and stunted growth.
You’re not in the clear just yet. Young Swiss chard, brassica, tomato, and pepper seedlings are especially vulnerable to damping off. To avoid this, provide good drainage and ideal temperatures, limit humidity, prevent mold, and only water when needed. Use clean seeds, soil, and containers to ensure last year’s pathogens aren’t affecting this year’s crops.
Related: How to Bottom Water Your Plants (Without Overdoing It) Step-by-Step
Mesh trays are the gold standard for efficient, healthy microgreen production. Microgreen growers love them for their enhanced airflow, which helps keep roots healthy, reduces disease risk, and provides consistent growth.
If you’ve grown micros in regular 1020s or trays with no holes, you’ll instantly see the benefits of using mesh trays. Our heavy-duty trays are sturdy and designed to hold lots of weight. Plus, they feature tabs for quick lifting and tray transitions when bottom watering.
Bootstrap tip: Use the colored trays to organize your microgreens by variety or date sown.
Use our Ultimate Microgreen Cheat Sheet as a guide to help you grow microgreens. It includes ideal seeding rates. Here are the seed density recommendations per 1020 tray for a few of our favorite, reliable microgreens:
Bootstrap tip: Use an herb jar lid to sow consistently by sprinkling seeds over the tray. The rate depends on the seed size and days to maturity.
While more scientific research is needed to understand microgreen health benefits, studies like this one from The National Library of Medicine concluded that “they’re a stellar source of phytochemicals, such as essential minerals, polyphenols, carotenoids, chlorophyll, anthocyanins, glucosinolates, etc.”
Growing on a larger scale? Check out the Little Green Seeding Machine for streamlined seeding for microgreens.
Top water newly seeded microgreen trays with a mister or gentle nozzle before stacking them. Switch to bottom watering after germination. Bottom water microgreens in these seven simple steps:
If your bottom tray doesn’t have holes, dump water that drips into it to enhance breathability and prevent fungal disease. Check the moisture levels two to three times a day as you learn what each tray and crop requires. Allow the soil to dry out slightly before watering.
Bootstrap tip: Run an oscillating or grow rack fan to prevent soggy soil and pests.
Our microgreen cheat sheet conveniently includes the days to maturity and the ideal harvest day. With experience, you’ll know when to cut the greens by examining the leaves.
Sow shorter microgreens in shallow trays so you can harvest them down to the root without the height of the deep trays getting in the way. Use deep trays for crops like pea shoots that you can grab without causing damage.
Refer to our other microgreen guides and blogs to help you grow them like a pro.
Harvesting methods and tips:
Bootstrap tip: Use a blackout humidity dome to stretch the stem length for chefs who prefer them longer.
As if you didn’t already love our mesh trays enough, as promised, here are some other ways to use them you might not have thought of.
Pair our air-pruning 4-cell- and 6-cell plugs with deep mesh trays for the ultimate watering setup. Fill the mesh bottom with inserts and store them in a deep 1020. A 1020 fits 12 or eight inserts, respectively. To water, move the mesh tray to a water-filled deep 1020 without holes. When the inserts are done soaking up water from below, move the mesh tray back into the tray with holes. The holes help drain excess water and provide some circulation.
Inserts are perfect for cuttings, tomatoes, and herbs. However, they aren’t compatible with humidity domes in 1010 or 1020 trays; the fit is snug.
Mesh trays are also great for supporting CowPots ® before transplanting. CowPots® are great for cucurbits and other plants that don’t do well with root disturbance. A mesh tray makes it easy to move and water lots of CowPots® at once without the risk of tearing them.
Sift homemade compost or potting mix to remove debris like rocks, twigs, and veggie scraps that have yet to break down. This process creates lighter soil, improves drainage, and increases plant growth.
You can build a vermicomposting sifter with wood, a metal mesh screen, and staples, but why not use your existing mesh trays? Running vermicompost through a sieve produces an ultra-lightweight, silky product. It’s easier to store and spread in the garden, plus you can add to houseplants for a nutrient boost.
When it’s time to wake up your dahlia tubers or start ginger:
Read more in How to Successfully Start Dahlia Tubers Indoors: A Beginner's Guide.
Use mesh trays to dry herbs to provide excellent airflow, allowing them to dry evenly without forming mold or mildew. Lay cuttings in a single layer atop the tray, leaving plenty of space between each. Set the tray in a dark, cool place.
Turn herbs with a high moisture content, like mint and basil, daily to prevent mold. Rosemary, thyme, and lavender aren’t as prone to mold, so turn them every few days.
Easily grow legumes, grains, greens, and grasses for your flock with mesh trays. Grab some 5x5 inserts or pots and arrange them in a deep mesh tray. When it’s time to water, follow the bottom watering method outlined above. Learn about our favorite sprouted fodder options in How to Grow Fodder Indoors for Chickens.
Disinfect and properly store your trays. They’ll last longer, prevent degradation, and uphold the two-year warranty Bootstrap Farmer’s trays come with.
Hygiene is everything, especially for delicate microgreens. Don’t let lingering bacteria affect germination and your crop. Grab these supplies:
Sturdy brush designated for cleaning trays
Clean water
Mild detergent
White vinegar
Optional disinfectant of your choice: H202 regular, or food-grade peroxide
Drying rack
Bootstrap tip: Use a sturdy metal bread scraper to remove tough roots in one swift motion. They’re inexpensive, long-lasting, and ergonomically friendly.
Use the brush to remove dried debris. Wash the trays with mild soap and water, scrubbing off any dirt or debris in corners and cracks. Rinse thoroughly. Spray them with a diluted vinegar solution and allow them to dry for ten minutes before rinsing them again. Optionally, spray them with an H202 solution and let them dry thoroughly before storage.
Do you need to wash a lot of trays quickly? Check out our commercial tray washer. The pressure washer is sold separately.
Watch to learn more about H202 in How to Dilute Food Grade H202 and When to Use it.
You might not get hit with a disease after skipping one cleaning session, but why risk it? Avoid crop loss and keep your micros healthy by cleaning your trays after each use. Sneaky pathogens can hinder germination rates, cause damping off, and crop loss.
Read more in How to Wash and Care for Seedling Trays.
Allow clean trays to dry before storing them. Keep various sizes, types, and depths of trays stacked together to grab what you need during your busy season quickly. Store them together and out of direct sunlight to prevent warping and cracking due to degradation.
Mesh trays offer excellent drainage and airflow, making it a breeze for bottom water. The constant air circulation prevents mold and allows the roots to air prune, bulking up your yields. Mesh trays may need to be watered more often than regular trays with holes.
Pair mesh trays with 1020 trays with holes to help drain excess moisture and prevent mold and damping off. Mold thrives in damp, dark environments. To reduce the risk, let the soil and roots breathe and dry slightly between waterings. Use a fan or dehumidifier if your grow area is humid or stagnant.
You can reuse the trays but: We don’t recommend reusing growing media for another cycle. Immediately after harvest, roots break down, which may attract bugs and mold and increase the risk of fungal disease. For alternatives, check out Reusing Spent Trays of Cut Microgreens.
Mesh trays are often used for large seeds or fodder crops, but you can also use them with tiny seeds sown in coco coir or soil, offering increased drainage. Use deep trays for chives, sunflower shoots, pea shoots, and tall summer crops like tomatoes and peppers.
You can use mesh trays indoors and outdoors. Direct or harsh sunlight will lead to degradation and discoloration over time, so store trays in a dark, cool area when not in use to extend their longevity.
Soil blocks are beginner-friendly when used with a mesh tray. Our range of blocks has something for every level of gardener. The mesh makes it easy to bottom water without accidentally dumping the blocks.
The mesh trays are designed to sit inside a bottom tray without holes of the same depth.
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